Scanpy: Single-Cell Analysis

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format q

Source: github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/scanpy · License: MIT