CZ CELLxGENE Census

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.

Source: github.com/K-Dense-AI/scientific-agent-skills/tree/main/scientific-skills/cellxgene-census · License: MIT