Fylogenetische wetenschap

# Phylogenetic Tree Construction and Analysis Pipeline ## 1. Installation & Setup ```bash # Install bioconda environment conda create -n phylo_env python=3.11 conda activate phylo_env # Core tools conda install -c bioconda mafft iqtree fasttree conda install -c bioconda ete3 figtree raxml pip install biopython matplotlib seaborn pandas numpy scipy # Optional: for advanced visualization pip install plotly kaleido toyplot ``` ## 2. Multiple Sequence Alignment (MAFFT) ```python #!/usr/bin/env python3 """ MAFFT-based multiple sequence alignment """ import subprocess import os from Bio import AlignIO, SeqIO class MAFFTAlignment: def __init__(self, input_fasta, output

Bron: github.com/K-Dense-AI/scientific-agent-skills/tree/main/scientific-skills/phylogenetics · Licentie: MIT